PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07790.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 282aa    MW: 32713.3 Da    PI: 9.1804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07790.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.12.7e-13711712128
                      NAM  12 eelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdk.kyatgkrknratksgyWkatgkdkevlsk 95 
                              e+ +  yL + v g ++++ + i+ vd+y + +P++L   ++++++  y F++ +k k+++g++ nr    g+W  +  +++v++k
  Sme2.5_07790.1_g00004.1   7 EQQLLGYLLRFVPGMPVQC-DQIRFVDLYGIkKPSKLL-DTTTTNHYHYVFTQLKKiKAENGNNFNRRFVGGTWTGKAATRSVYNK 90 
                              555559*************.88*******9878****7.44444556677777666155689*****999**************** PP

                      NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +++++g k+ + f     +  +   W m ey+l
  Sme2.5_07790.1_g00004.1  91 ERSEIGFKRAFRFD----E--NTLAWYMTEYHL 117
                              *************7....2..3578******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.1331144IPR003441NAC domain
SuperFamilySSF1019411.31E-146142IPR003441NAC domain
PfamPF023655.2E-68117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAMKIDEQQL LGYLLRFVPG MPVQCDQIRF VDLYGIKKPS KLLDTTTTNH YHYVFTQLKK  60
IKAENGNNFN RRFVGGTWTG KAATRSVYNK ERSEIGFKRA FRFDENTLAW YMTEYHLSDK  120
ILEHLRLRGQ IRYEEFVVCY IRCNVNLDHN RENFLANSSP NSSSQCQETM KSFAQENQDL  180
GESSAANVTH PANLLANESN VAAIKEEEES SARPDYDIAA YYKNLMPMLP LYSKQWFLTF  240
RNYKKMRMKS HFSAKIFILV IQICGVKSVP SNFSDYAPSS HI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249KKMRMKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755147e-56HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064738.13e-65PREDICTED: uncharacterized protein LOC107009957
TrEMBLM1C7F51e-64M1C7F5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613904e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041